miRBase entry: dre-let-7a-1

Stem-loop dre-let-7a-1


Accession
MI0001857
Description
Danio rerio dre-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
43 open access papers mention dre-let-7a-1
(336 sentences)

Sequence

195394 reads, 13812 reads per million, 11 experiments
gacggugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccacacugggagauaacuauacaaccuacugucuuucucaaaguc
(((..(((((.(((((((((((((((((((((.....(((...((((...)))).)))))))))))))))))))))))))))))..)))

Structure
   gg     U                     uuagg   aca    c 
gac  uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca  
|||  ||||| |||||||||||||||||||||     |||   |||| a
cug  acucu uucugucauccaacauaucaa     uag   gggu  
   aa     -                     -----   --a    c 


Annotation confidence High
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Genome context
chr11: 27503232-27503320 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7a

Accession MIMAT0001759
Description Danio rerio dre-let-7a mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293