Stem-loop sequence sbi-MIR169a

Accession

MI0001516 (change log)

Description

Sorghum bicolor miR169a stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

4 open access papers mention sbi-MIR169a
(23 sentences)

Stem-loop

   c         ug         u   u     caaacucc       ucu 
5'  agccaagga  acuugccga cga cgaug        ucugaug   g
    |||||||||  ||||||||| ||| |||||        |||||||    
3'  ucgguucuu  ugaacggcu guu gcuau        agacuac   a
   a         gu         -   -     -------u       ucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr3: 10749535-10749625 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000799473_4558
• miRBase Tracker:MI0001516

Mature sequence sbi-miR169a

• Accession: MIMAT0001410
• Sequence: 1 - cagccaaggaugacuugccga - 21
• Evidence: by similarity; MI0000976

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).