Stem-loop sequence sbi-MIR164a

Accession

MI0001512 (change log)

Previous IDs

sbi-MIR164

Description

Sorghum bicolor miR164 stem-loop

Gene family

MIPF0000045; MIR164

Literature search

5 open access papers mention sbi-MIR164a
(13 sentences)

Stem-loop

   u       ca         cauu        augccgccaagcucgauccuccucugagcuu 
5'  ggagaag  gggcacgug    accaucca                               g
    |||||||  |||||||||    ||||||||                                
3'  ccucuuc  cccguguac    ugguaggu                               c
   a       ua         uucu        aggucgguaccgaccgcucgacuaccucgau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr9: 38911782-38911907 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000794B84_4558
• miRBase Tracker:MI0001512

Mature sequence sbi-miR164a

• Accession: MIMAT0001406
• Previous IDs: sbi-miR164
• Sequence: 1 - uggagaagcagggcacgugca - 21
• Evidence: by similarity; MI0000198

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:15660154 "Sorghum genome sequencing by methylation filtration" Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA PLoS Biol. 3:e13(2005).