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miRBase |
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Stem-loop sequence zma-MIR172b |
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Accession | MI0001495 (change log) | ||||
Description | Zea mays miR172b stem-loop | ||||
Gene family | MIPF0000035; MIR172 | ||||
Literature search |
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37 open access papers mention zma-MIR172b | ||||
Stem-loop |
c a guccaacucaug c cuu aug u 5' gugcagca caucaagauuc cauc caucaug auauaugcau ca augcg g |||||||| ||||||||||| |||| ||||||| |||||||||| || ||||| c 3' uacgucgu guaguucuaag guag guaguau uauauaugug gu uacgc c a a -----------a a --u --g u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence zma-miR172b-5p |
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Accession | MIMAT0015157 |
Previous IDs | zma-miR172b* |
Sequence |
4 - cagcaccaucaagauucaca - 23 |
Deep sequencing | 6 reads, 1 experiments |
Evidence | experimental; Illumina [2] |
Mature sequence zma-miR172b-3p |
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Accession | MIMAT0001389 |
Previous IDs | zma-miR172b |
Sequence |
106 - agaaucuugaugaugcugca - 125 |
Deep sequencing | 2359 reads, 5 experiments |
Evidence | experimental; Illumina [2] |
References |
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1 |
"Identifying microRNAs in plant genomes"
Proc IEEE CSB :718-723(2004).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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