Stem-loop zma-MIR172b

Accession

MI0001495

Description

Zea mays zma-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

37 open access papers mention zma-MIR172b
(263 sentences)

Sequence

2028 reads, 5334 reads per million, 3 experiments

gugCAGCACCAUCAAGAUUCACAucguccaacucaugcaucaugcauauaugcaucuucaaugaugcgugccucgcauguguguguauauauauaugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((.(((((((((((.((((.........(((((...))))).((((((((......))))))))..((((((((((((....))))))))).))))))).))))))))))).))))))))

Structure

        C           A    guccaacucaugcaucaugcauauaugcaucuucaaugaugcgugcc   -         g 
gugCAGCA CAUCAAGAUUC CAuc                                               ucg caugugugu u
|||||||| ||||||||||| ||||                                               ||| |||||||||  
uACGUCGU GUAGUUCUAAG guag                                               agu guauauaua a
        A           A    -----------------------------------------------   a         u 

Annotation confidence Not enough data

Genome context

chr5: 221721349-221721474 [-]

Mature zma-miR172b-5p

• Accession: MIMAT0015157
• Description: Zea mays zma-miR172b-5p mature miRNA
• Sequence: 4 - CAGCACCAUCAAGAUUCACA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR172b-3p

• Accession: MIMAT0001389
• Description: Zea mays zma-miR172b-3p mature miRNA
• Sequence: 106 - AGAAUCUUGAUGAUGCUGCA - 125
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716