Stem-loop sequence zma-MIR162

Accession

MI0001481 (change log)

Description

Zea mays miR162 stem-loop

Gene family

MIPF0000169; MIR162_2

Literature search

20 open access papers mention zma-MIR162
(53 sentences)

Stem-loop

       gc    u            uc     u  c    gcugguccggccgggaguggugguuc 
5' cugg  gcag gguuuaucgauc  uuccu gc uugu                          a
   ||||  |||| ||||||||||||  ||||| || ||||                          a
3' gacc  cguc ccaaauagcugg  aaggg cg aaca                          g
       ua    u            cu     -  c    aacgcucgacgacguuguuauuuugc 

Deep sequencing

3896 reads, 2.96e+03 reads per million, 186 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 186614119-186614248 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS0000759FBB_4577
• miRBase Tracker:MI0001481

Mature sequence zma-miR162-5p

• Accession: MIMAT0015147
• Previous IDs: zma-miR162*
• Sequence: 3 - gggcgcagugguuuaucgauc - 23
• Deep sequencing: 6 reads, 3 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR162-3p

• Accession: MIMAT0001376
• Previous IDs: zma-miR162
• Sequence: 110 - ucgauaaaccucugcaucca - 129
• Deep sequencing: 409 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000002C5A5_4577

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).