Stem-loop sequence zma-MIR167a

Accession

MI0001475 (change log)

Description

Zea mays miR167a stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

31 open access papers mention zma-MIR167a
(141 sentences)

Stem-loop

   u     -----  c   u      a    c  -            uc       guu     cauauuagc     uccac      -      u      -    
5'  gcucu     ug gaa gaguga gcug ca gcaugaucuagc  ugauuug   ggcac         aggcg     gcacag cuagac agagug gcc 
    |||||     || ||| |||||| |||| || ||||||||||||  |||||||   |||||         |||||     |||||| |||||| |||||| || u
3'  cgggg     ac cuu cuuacu cgac gu cguacuagauug  gcuaaac   ccgug         uucgc     uguguc ggucug ucucgc cgc 
   -     ucuua  a   c      c    a  a            uu       -gu     --------u     ---uc      u      c      g    

Deep sequencing

25575 reads, 2.43e+03 reads per million, 171 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 119392621-119392810 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR167a

• zma-MIR167a: chr3: 119392621-119392810 [+]
• zma-MIR167g: chr3: 119394584-119394826 [+]

Database links

• miRBase Tracker:MI0001475

Mature sequence zma-miR167a-5p

• Accession: MIMAT0001370
• Previous IDs: zma-miR167a
• Sequence: 17 - ugaagcugccagcaugaucua - 37
• Deep sequencing: 24758 reads, 158 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR167a-3p

• Accession: MIMAT0015142
• Previous IDs: zma-miR167a*
• Sequence: 151 - gaucaugcaugacagccucauu - 172
• Deep sequencing: 8 reads, 3 experiments
• Evidence: experimental; Illumina [2]

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).