Stem-loop zma-MIR169b

Accession

MI0001474

Description

Zea mays zma-MIR169b precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

30 open access papers mention zma-MIR169b
(220 sentences)

Sequence

700 reads, 1649 reads per million, 109 experiments

uaggcucggggacuacggugCAGCCAAGGAUGACUUGCCGAucuaucgucgaucaacgagcgacgccucugaugucugaucucgacaucuaucgucgucagaccaucaucaucuaucGGCAAGUUGUUCUUGGCUACAccguggcuccugcuccug
((((..(((((.((((((((.(((((((((((((((((((((....(((((.........)))))....(((((((((((..(((......)))..)))))).)))))......))))))))))))))))))))).)))))))).)))))..))))

Structure

    cu     a        C                     cuaucgucgaucaacgagcgacgccuc     -      cu   ca 
uagg  cgggg cuacggug AGCCAAGGAUGACUUGCCGAu                           ugaug ucugau  cga  u
||||  ||||| |||||||| |||||||||||||||||||||                           ||||| ||||||  |||   
gucc  guccu ggugccAC UCGGUUCUUGUUGAACGGcua                           acuac agacug  gcu  c
    uc     c        A                     ---------------------ucuacu     c      cu   au 

Annotation confidence Not enough data

Genome context

chr8: 5012331-5012486 [-]

Mature zma-miR169b-5p

• Accession: MIMAT0001369
• Description: Zea mays zma-miR169b-5p mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: experimental ; Illumina [2]

Mature zma-miR169b-3p

• Accession: MIMAT0015141
• Description: Zea mays zma-miR169b-3p mature miRNA
• Sequence: 118 - GGCAAGUUGUUCUUGGCUACA - 138
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716