Stem-loop zma-MIR160b

Accession

MI0001468

Description

Zea mays zma-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention zma-MIR160b
(76 sentences)

Sequence

666 reads, 1502 reads per million, 4 experiments

cgaucggcucgugucgugugUGCCUGGCUCCCUGUAUGCCAcacauguagccaacccguggcgugauuggaugcugugggugGCGUGCAAGGAGCCAAGCAUGcauaacaggccaugauca
.((((((((..(((.((((((((.(((((((.((((((((((.((((((.((((.(((...)).).)))).))).))).)))))))))).))))))).)))))))).)))))))..)))).

Structure

c    --    cg   c        C       C          a   -   g    c -  u 
 gauc  ggcu  ugu gugugUGC UGGCUCC UGUAUGCCAc cau gua ccaa c cg  
 ||||  ||||  ||| |||||||| ||||||| |||||||||| ||| ||| |||| | || g
 cuag  ccgg  aca uacGUACG ACCGAGG ACGUGCGgug gug cgu gguu g gc  
a    ua    --   a        A       A          g   u   a    a u  g 

Annotation confidence High

Genome context

chr5: 44296768-44296888 [-]

Mature zma-miR160b-5p

• Accession: MIMAT0001363
• Description: Zea mays zma-miR160b-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCA - 41
• Evidence: experimental ; Illumina [3]

Mature zma-miR160b-3p

• Accession: MIMAT0015135
• Description: Zea mays zma-miR160b-3p mature miRNA
• Sequence: 83 - GCGUGCAAGGAGCCAAGCAUG - 103
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360