Stem-loop zma-MIR156i

Accession

MI0001464

Description

Zea mays zma-MIR156i precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

52 open access papers mention zma-MIR156i
(341 sentences)

Sequence

126620 reads, 134769 reads per million, 139 experiments

cgcggcgggcggUGACAGAAGAGAGUGAGCACacggccgggcggaacggcaccggcggauggugccgucgcggacgcguGCUCACUGCUCUAUCUGUCAUCcacucucucccccgcu
.((((.(((.((((((((((((((((((((((.((.(((.(....(((((((((.....)))))))))).))).)).))))))))).)))).)))))))))........))))))).

Structure

c    c   -------c         -    -         a  g   g cgga         g 
 gcgg ggg        ggUGACAGA AGAG AGUGAGCAC cg ccg g    acggcaccg c
 |||| |||        ||||||||| |||| ||||||||| || ||| |    ||||||||| g
 cgcc ccc        CUACUGUCU UCUC UCACUCGug gc ggc c    ugccguggu g
u    -   ucucucac         A    G         c  a   g ----         a 

Annotation confidence High

Genome context

chr4: 140280587-140280703 [-]

Mature zma-miR156i-5p

• Accession: MIMAT0001359
• Description: Zea mays zma-miR156i-5p mature miRNA
• Sequence: 13 - UGACAGAAGAGAGUGAGCAC - 32
• Evidence: experimental ; Illumina [2]

Mature zma-miR156i-3p

• Accession: MIMAT0015131
• Description: Zea mays zma-miR156i-3p mature miRNA
• Sequence: 80 - GCUCACUGCUCUAUCUGUCAUC - 101
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716