Stem-loop sequence dre-mir-217

Accession

MI0001383 (change log)

Previous IDs

dre-mir-217;dre-mir-217-1

Description

Danio rerio miR-217 stem-loop

Gene family

MIPF0000077; mir-217

Literature search

3 open access papers mention dre-mir-217
(12 sentences)

Stem-loop

   augagaa     u          auac                u  ---a  a 
5'        cuuuc gauguuggug    ugcaucaggaacugau gg    ug u
          ||||| ||||||||||    |||||||||||||||| ||    || a
3'        gaaag cuacgacuac    acguaguccuugacua cc    ac u
   ------a     -          ccuc                -  gagg  u 

Deep sequencing

5369 reads, 200 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr22: 28779715-28779812 [-]	intergenic
KZ115653.1: 67238-67335 [-]	intergenic

Clustered miRNAs

< 10kb from dre-mir-217

• dre-mir-216b: chr22: 28780257-28780333 [-]
• dre-mir-216a: chr22: 28779949-28780037 [-]
• dre-mir-217: chr22: 28779715-28779812 [-]

Database links

• EntrezGene:mir217-1
• EntrezGene:mir217-1
• RNAcentral:URS000075DE71_7955
• miRBase Tracker:MI0001383

Mature sequence dre-miR-217

• Accession: MIMAT0001285
• Sequence: 25 - uacugcaucaggaacugauugg - 46
• Deep sequencing: 5367 reads, 8 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS00004D9322_7955
• Predicted targets:
  • TargetScanFish:dre-miR-217

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).