Stem-loop sequence dre-mir-210

AccessionMI0001379 (change log)
DescriptionDanio rerio miR-210 stem-loop
Gene family MIPF0000086; mir-210
Literature search

5 open access papers mention dre-mir-210
(13 sentences)

   gca   a    a   acua       u  cgccuau 
5'    ggu agcc cug    acgcaca ug       u
      ||| |||| |||    ||||||| ||        
3'    cca ucgg gac    ugcgugu ac       c
   -ga   a    c   agug       c  cucaccu 
Get sequence
Deep sequencing
3937 reads, 45.5 reads per million, 11 experiments
Confidence Annotation confidence: high
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Lim et al. cloned this miRNA from D. rerio [1]. The 3' end of the mature sequence was not determined, but was later analysed in a study of many clones in mouse [2]. The most common cloned length is shown here.

Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr25: 25506483-25506555 [-]
Database links

Mature sequence dre-miR-210-5p

Accession MIMAT0003392
Previous IDsdre-miR-210*

8 - 


 - 29

Get sequence
Deep sequencing485 reads, 10 experiments
Evidence experimental; cloned [3]
Database links

Mature sequence dre-miR-210-3p

Accession MIMAT0001281
Previous IDsdre-miR-210

48 - 


 - 69

Get sequence
Deep sequencing3450 reads, 11 experiments
Evidence experimental; cloned [1,3]
Database links
Predicted targets


PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).