Stem-loop sequence dre-mir-204-1

Accession

MI0001377 (change log)

Previous IDs

dre-mir-204

Description

Danio rerio miR-204-1 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

4 open access papers mention dre-mir-204-1
(18 sentences)

Stem-loop

   ---------------ucauguga   gug        uuu   a    ---a   c 
5'                        ccu   gacuuccc   guc uccu    ugc u
                          |||   ||||||||   ||| ||||    ||| g
3'                        gga   cugaaggg   cgg ggga    aug g
   cgcuuacuacugcggacucgcag   -aa        --u   -    gaua   a 

Deep sequencing

139484 reads, 8.36e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 25972068-25972160 [+]
• Overlapping transcripts:

  sense

  OTTDART00000021500 ; trpm3-001; intron 5

  ENSDART00000147188 ; trpm3-001; intron 5

  ENSDART00000088033 ; trpm3-201; intron 5

Database links

• EntrezGene:mir204-1
• EntrezGene:mir204-1
• RNAcentral:URS000075DEA1_7955
• miRBase Tracker:MI0001377

Mature sequence dre-miR-204-5p

• Accession: MIMAT0001279
• Previous IDs: dre-miR-204
• Sequence: 18 - uucccuuugucauccuaugccu - 39
• Deep sequencing: 340914 reads, 11 experiments
• Evidence: experimental; cloned [1]

Mature sequence dre-miR-204-3p

• Accession: MIMAT0031924
• Sequence: 54 - ggcugggaagucaaagggacgc - 75
• Deep sequencing: 53 reads, 3 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076D474_7955

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).