Stem-loop sequence gga-mir-24

Accession

MI0001275 (change log)

Description

Gallus gallus miR-24 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

10 open access papers mention gga-mir-24
(16 sentences)

Stem-loop

       g  g   a         ua     uc  au 
5' cucc gu ccu cugagcuga  ucagu  ug  u
   |||| || ||| |||||||||  |||||  ||   
3' gagg ca gga gacuugacu  gguca  ac  u
       a  a   c         -c     -u  au 

Deep sequencing

375373 reads, 4e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 41649935-41650002 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-24

• gga-mir-23b: chrZ: 41649166-41649251 [+]
• gga-mir-27b: chrZ: 41649402-41649498 [+]
• gga-mir-24: chrZ: 41649935-41650002 [+]

Database links

• EntrezGene:
• RNAcentral:URS00006A7157_9031
• miRBase Tracker:MI0001275

Mature sequence gga-miR-24-5p

• Accession: MIMAT0026548
• Sequence: 6 - gugccuacugagcugauaucagu - 28
• Deep sequencing: 132 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-24-5p
  • miRDB:gga-miR-24-5p

Mature sequence gga-miR-24-3p

• Accession: MIMAT0001188
• Sequence: 44 - uggcucaguucagcaggaacag - 65
• Deep sequencing: 375240 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS000059273E_9031
• Predicted targets:
  • TargetScanVert:gga-miR-24-3p
  • miRDB:gga-miR-24-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).