Stem-loop sequence gga-mir-101-1

Accession

MI0001270 (change log)

Previous IDs

gga-mir-101

Description

Gallus gallus miR-101 stem-loop

Gene family

MIPF0000046; mir-101

Literature search

14 open access papers mention gga-mir-101-1
(215 sentences)

Stem-loop

         c                    cg     guaua 
5' acuauc uuuuucgguuaucaugguac  gugcu     c
   |||||| ||||||||||||||||||||  |||||      
3' uggugg aagaagucaauagugucaug  caugg     g
         u                    -a     aaagu 

Deep sequencing

2048440 reads, 2.71e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 27510654-27510732 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000024230 ; RCL1-201; intron 8

Database links

• EntrezGene:
• RNAcentral:URS000075D3C2_9031
• miRBase Tracker:MI0001270

Mature sequence gga-miR-101-1-5p

• Accession: MIMAT0026545
• Sequence: 12 - ucgguuaucaugguaccggugcu - 34
• Deep sequencing: 114 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-101-1-5p
  • miRDB:gga-miR-101-1-5p

Mature sequence gga-miR-101-3p

• Accession: MIMAT0001185
• Sequence: 48 - guacaguacugugauaacugaa - 69
• Deep sequencing: 4095283 reads, 5 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS000075D737_9031
• Predicted targets:
  • TargetScanVert:gga-miR-101-3p
  • miRDB:gga-miR-101-3p

References

1. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
4. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
5. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).
6. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).