Stem-loop gga-mir-301a

Accession

MI0001240

Description

Gallus gallus gga-mir-301a precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

4 open access papers mention gga-mir-301a
(8 sentences)

Sequence

972 reads, 13 reads per million, 5 experiments

uggcugcugguaucgcuggcUCUGACAAUGUUGCACUACUgucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCAUuugguuccaguc
.....(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).))))).

Structure

uggcu     u    cug   C         ---      A  gucugc 
     gcugg aucg   gcU UGACAAUGU   UGCACU CU      a
     ||||| ||||   ||| |||||||||   |||||| ||       
     ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
----c     u    uUA   A         AUA      C  aauaaa 

Annotation confidence High

Genome context

chr15: 406743-406835 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-301a

Mature gga-miR-301a-3p

• Accession: MIMAT0001166
• Description: Gallus gallus gga-miR-301a-3p mature miRNA
• Sequence: 57 - CAGUGCAAUAAUAUUGUCAAAGCAU - 81
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-301a-5p

• Accession: MIMAT0026531
• Description: Gallus gallus gga-miR-301a-5p mature miRNA
• Sequence: 21 - UCUGACAAUGUUGCACUACU - 40
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45