Stem-loop gga-mir-15b

Accession

MI0001223

Description

Gallus gallus gga-mir-15b precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

12 open access papers mention gga-mir-15b
(25 sentences)

Sequence

1189 reads, 27 reads per million, 5 experiments

ugaggccuuaaaguacucUAGCAGCACAUCAUGGUUUGCAugcuguagugaagaugcGAAUCAUUAUUUGCUGCUUUAgaaauuuaaggaa
.....(((((((...((..(((((((.((.(((((((((((.((.......))))))))))))).)).)))))))..))...)))))))..

Structure

ugagg       gua  cU       C  C           g  gu 
     ccuuaaa   cu  AGCAGCA AU AUGGUUUGCAu cu  a
     |||||||   ||  ||||||| || ||||||||||| ||  g
     ggaauuu   gA  UCGUCGU UA UACUAAGcgua ga  u
---aa       aaa  UU       U  U           -  ag 

Annotation confidence Not enough data

Genome context

chr9: 22277073-22277163 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-15b

Mature gga-miR-15b-5p

• Accession: MIMAT0001154
• Description: Gallus gallus gga-miR-15b-5p mature miRNA
• Sequence: 19 - UAGCAGCACAUCAUGGUUUGCA - 40
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-15b-3p

• Accession: MIMAT0026524
• Description: Gallus gallus gga-miR-15b-3p mature miRNA
• Sequence: 58 - GAAUCAUUAUUUGCUGCUUUA - 78
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45