Stem-loop sequence gga-mir-181a-1

Accession

MI0001218 (change log)

Previous IDs

gga-mir-213

Description

Gallus gallus miR-181a-1 stem-loop

Gene family

MIPF0000007; mir-181

Literature search

13 open access papers mention gga-mir-181a-1
(105 sentences)

Stem-loop

   -----ugua      -   uc  u a   u      cu       a    gga  u 
5'          gugguu gcu  ag g aca ucaacg  gucggug guuu   au u
            |||||| |||  || | ||| ||||||  ||||||| ||||   ||  
3'          uaccaa cga  uc c ugu aguugc  cagcuac caaa   ug a
   uccuccucc      u   cc  c a   u      --       -    -ag  a 

Deep sequencing

1690368 reads, 1.77e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr8: 2005169-2005272 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-181a-1

• gga-mir-181a-1: chr8: 2005169-2005272 [+]
• gga-mir-181b-1: chr8: 2005358-2005446 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075D865_9031
• miRBase Tracker:MI0001218

Mature sequence gga-miR-181a-5p

• Accession: MIMAT0001168
• Previous IDs: gga-miR-181a
• Sequence: 20 - aacauucaacgcugucggugagu - 42
• Deep sequencing: 3304210 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00003DA300_9031
• Predicted targets:
  • TargetScanVert:gga-miR-181a-5p
  • miRDB:gga-miR-181a-5p

Mature sequence gga-miR-181a-3p

• Accession: MIMAT0001150
• Previous IDs: gga-miR-213;gga-miR-181a*
• Sequence: 60 - accaucgaccguugauuguacc - 81
• Deep sequencing: 38253 reads, 5 experiments
• Evidence: by similarity; MI0000289
• Database links:
  • RNAcentral:URS000003F252_9031
• Predicted targets:
  • TargetScanVert:gga-miR-181a-3p
  • miRDB:gga-miR-181a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).