Stem-loop gga-mir-19a

Accession

MI0001182

Description

Gallus gallus gga-mir-19a precursor miRNA

Gene family

MIPF0000011; mir-19

Literature search

13 open access papers mention gga-mir-19a
(154 sentences)

Sequence

4397 reads, 109 reads per million, 5 experiments

gcagucuucuguuAGUUUUGCAUAGUUGCACUACaggaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccug
.(((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).)))

Structure

g   u  u                 --      ---    gg 
 cag cu cuguuAGUUUUGCAUAG  UUGCAC   UACa  a
 ||| || |||||||||||||||||  ||||||   ||||  a
 guc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
-   c  u                 UA      Uug    aa 

Annotation confidence High

Genome context

chr1: 148023685-148023765 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-19a

Mature gga-miR-19a-3p

• Accession: MIMAT0001112
• Description: Gallus gallus gga-miR-19a-3p mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-19a-5p

• Accession: MIMAT0026498
• Description: Gallus gallus gga-miR-19a-5p mature miRNA
• Sequence: 14 - AGUUUUGCAUAGUUGCACUAC - 34
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45