Accession
MI0001023
Description
Arabidopsis thaliana
ath-MIR399d precursor miRNA
Gene family
MIPF0000015;
MIR399
Literature search
37 open access papers mention ath-MIR399d
(207 sentences)
(207 sentences)
Sequence
gguuggauuacugggcgaauacuccuauggcagaucgcauuggcuagauaugcaaguaaaaugcuucucUGCCAAAGGAGAUUUGCCCCGcaauucaucc
((.((((((.(.((((((((.(((((.(((((((..(((((.(((.(.....).)))..)))))...))))))).))))))))))))).).)))))).))
((.((((((.(.((((((((.(((((.(((((((..(((((.(((.(.....).)))..)))))...))))))).))))))))))))).).)))))).))
Structure
u a u a a -uc -g a a gg uggauu c gggcgaau cuccu uggcaga gcauu gcu g u || |||||| | |||||||| ||||| ||||||| ||||| ||| | a cc acuuaa G CCCGUUUA GAGGA ACCGUcu cguaa uga c u u c C - A cuu aa a g
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr2: 14442978-14443077 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR399d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR399d
| Accession | MIMAT0000954 |
| Description | Arabidopsis thaliana ath-miR399d mature miRNA |
| Sequence | 70 - UGCCAAAGGAGAUUUGCCCCG - 90 |
| Evidence |
experimental
PCR [1], 5'RACE [2], 454 [3-4], MPSS [3], Illumina [5] |
References
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