Accession
MI0001022
Description
Arabidopsis thaliana
ath-MIR399c precursor miRNA
Gene family
MIPF0000015;
MIR399
Literature search
34 open access papers mention ath-MIR399c
(175 sentences)
(175 sentences)
Sequence
ggagcaguaauaGGGCAUCUUUCUAUUGGCAGGcgacuuggcuauuuguaucuuuuguguucuugacuauuggcuaugucacuUGCCAAAGGAGAGUUGCCCUGucacugcuuc
((((((((.((((((((.((((((.((((((((.(((.((((((...((................))...)))))).))).)))))))).)))))).)))))))).))))))))
((((((((.((((((((.((((((.((((((((.(((.((((((...((................))...)))))).))).)))))))).)))))).)))))))).))))))))
Structure
a U A c u uuu aucuuuu
ggagcagu auaGGGCA CUUUCU UUGGCAGG gac uggcua gu g
|||||||| |||||||| |||||| |||||||| ||| |||||| ||
cuucguca uGUCCCGU GAGAGG AACCGUuc cug aucggu ca u
c U A a u uau guucuug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr5: 24962485-24962598 [+]
Database links
Mature ath-miR399c-3p
| Accession | MIMAT0000953 |
| Description | Arabidopsis thaliana ath-miR399c-3p mature miRNA |
| Sequence | 84 - UGCCAAAGGAGAGUUGCCCUG - 104 |
| Evidence |
experimental
PCR [1], cloned [2], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR399c-5p
| Accession | MIMAT0031913 |
| Description | Arabidopsis thaliana ath-miR399c-5p mature miRNA |
| Sequence | 13 - GGGCAUCUUUCUAUUGGCAGG - 33 |
| Evidence | not_experimental |
References
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