Accession
MI0001013
Description
Arabidopsis thaliana
ath-MIR396a precursor miRNA
Gene family
MIPF0000047;
MIR396
Literature search
29 open access papers mention ath-MIR396a
(269 sentences)
(269 sentences)
Sequence
cucuguauucUUCCACAGCUUUCUUGAACUGcaaaacuucuucagauuuuuuuuuuuuucuuuugauaucucuuacgcauaaaauagugauuuucuucauaucucugcucgauugauuugcgGUUCAAUAAAGCUGUGGGAAGauacagac
.((((((((.((((((((((((.((((((((((((.(.((..((((............((....))....................((((......))))...))))...))..).)))))))))))).)))))))))))).)))))))).
.((((((((.((((((((((((.((((((((((((.(.((..((((............((....))....................((((......))))...))))...))..).)))))))))))).)))))))))))).)))))))).
Structure
c c C a -u -uu uuuuuuuuuuuuucuuuugauaucucuuacgcauaaaaua uu ucuguauu UUCCACAGCUUU UUGAACUGcaaa c uc caga guga u |||||||| |||||||||||| |||||||||||| | || |||| |||| agacauaG AGGGUGUCGAAA AACUUGgcguuu g ag gucu uacu u c A U a uu cuc -------------------------------------cua uc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR396 family of miRNAs, which are predicted to target mRNAs coding for Growth Regulating Factor (GRF) transcription factors, rhodenase-like proteins, and kinesin-like protein B [1].
Genome context
chr2: 4142323-4142473 [-]
Database links
Mature ath-miR396a-5p
| Accession | MIMAT0000944 |
| Description | Arabidopsis thaliana ath-miR396a-5p mature miRNA |
| Sequence | 11 - UUCCACAGCUUUCUUGAACUG - 31 |
| Evidence |
experimental
5'RACE [1-2], Northern [1], PCR [1], 454 [3], MPSS [3] |
Mature ath-miR396a-3p
| Accession | MIMAT0031908 |
| Description | Arabidopsis thaliana ath-miR396a-3p mature miRNA |
| Sequence | 123 - GUUCAAUAAAGCUGUGGGAAG - 143 |
| Evidence |
experimental
Illumina [5] |
References
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