Accession
MI0001008
Description
Arabidopsis thaliana
ath-MIR395b precursor miRNA
Gene family
MIPF0000016;
MIR395
Literature search
26 open access papers mention ath-MIR395b
(108 sentences)
(108 sentences)
Sequence
auguccccaugaguucccuuuaacgcuucauuguuaaauacucaaagccacauugguuuguauacaacaCUGAAGUGUUUGGGGGGACUCuuggugucau
(((.(.(((.((((((((((.(((((((((.((((..((((...((((((...))))))))))..)))).))))))))).)))))))))).))).).)))
(((.(.(((.((((((((((.(((((((((.((((..((((...((((((...))))))))))..)))).))))))))).)))))))))).))).).)))
Structure
u c u u u aa uca c aug c cca gaguucccuu aacgcuuca uguu auac aagcca ||| | ||| |||||||||| ||||||||| |||| |||| |||||| a uac g ggu CUCAGGGGGG UUGUGAAGU acaa uaug uuuggu u u u U C ca --- u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].
Genome context
chr1: 9364471-9364570 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR395b
| Accession | MIMAT0000939 |
| Description | Arabidopsis thaliana ath-miR395b mature miRNA |
| Sequence | 70 - CUGAAGUGUUUGGGGGGACUC - 90 |
| Evidence |
experimental
5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4] |
References
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