Accession
MI0000992
Description
Arabidopsis thaliana
ath-MIR172d precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
54 open access papers mention ath-MIR172d
(305 sentences)
(305 sentences)
Sequence
agucauuguuugcuauuGCAACAUCUUCAAGAUUCAGAaaucagauucucuuauggguuuucuuuugagccuuuauuuuuugguuugAGAAUCUUGAUGAUGCUGCAGcggcaauuaaauggcu
(((((((..(((((.(((((.((((.(((((((((..((((((((......((.((((((......)))))).))...))))))))..))))))))).)))).))))).)))))...)))))))
(((((((..(((((.(((((.((((.(((((((((..((((((((......((.((((((......)))))).))...))))))))..))))))))).)))).))))).)))))...)))))))
Structure
-gu a A U AG uucucu u uc
agucauu uugcu uuGCA CAUC UCAAGAUUC Aaaucaga ua ggguuu u
||||||| ||||| ||||| |||| ||||||||| |||||||| || ||||||
ucgguaa aacgg GACGU GUAG AGUUCUAAG uuugguuu au uccgag u
auu c C U Ag ---uuu u uu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.
Genome context
chr3: 20587904-20588027 [+]
Database links
Mature ath-miR172d-3p
| Accession | MIMAT0000923 |
| Description | Arabidopsis thaliana ath-miR172d-3p mature miRNA |
| Sequence | 88 - AGAAUCUUGAUGAUGCUGCAG - 108 |
| Evidence |
experimental
cloned [2], 454 [3-4], MPSS [3], Illumina [5] |
Mature ath-miR172d-5p
| Accession | MIMAT0031901 |
| Description | Arabidopsis thaliana ath-miR172d-5p mature miRNA |
| Sequence | 18 - GCAACAUCUUCAAGAUUCAGA - 38 |
| Evidence | not_experimental |
References
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