Stem-loop sequence hsa-mir-339

AccessionMI0000815 (change log)
Symbol HGNC:MIR339
DescriptionHomo sapiens miR-339 stem-loop
Gene family MIPF0000193; mir-339
Literature search

58 open access papers mention hsa-mir-339
(199 sentences)

   ----------c       c    cu c     c  c   a       u  g 
5'            ggggcgg cgcu  c cuguc uc agg gcucacg gu c
              ||||||| ||||  | ||||| || ||| ||||||| ||  
3'            ccccguc gcgg  g gacag ag ucc cgagugu cg c
   cgcgucuguga       c    cc a     c  c   g       c  u 
Get sequence
Deep sequencing
100677 reads, 238 reads per million, 159 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

This sequence is the predicted homologue of a miRNA cloned from rat neuronal tissue [1,3]. Expression of mature miRNA was later verified in human [2,4]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4].

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr7: 1022933-1023026 [-]
OTTHUMT00000157249 ; CYP2W1-001; 3'UTR (exon 1)
ENST00000308919 ; CYP2W1-001; 3'UTR (exon 1)
Database links

Mature sequence hsa-miR-339-5p

Accession MIMAT0000764
Previous IDshsa-miR-339

15 - 


 - 37

Get sequence
Deep sequencing61790 reads, 158 experiments
Evidence experimental; cloned [2,4]
Database links
Predicted targets

Mature sequence hsa-miR-339-3p

Accession MIMAT0004702

50 - 


 - 72

Get sequence
Deep sequencing38862 reads, 158 experiments
Evidence experimental; cloned [4]
Database links
Predicted targets


PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:15325244 "Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells" Kasashima K, Nakamura Y, Kozu T Biochem Biophys Res Commun. 322:403-410(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).