miRBase entry: cbr-lin-4

Stem-loop cbr-lin-4


Accession
MI0000492
Description
Caenorhabditis briggsae cbr-lin-4 precursor miRNA
Gene family
MIPF0000303; lin-4


Sequence

aucagaugcuuucggccuguUCCCUGAGACCUCAAGUGUGAgcguucugaacaugcuucacgccugggcucuccggguaccaggacggucugag
.((((((.....((.((((..(((.((((.((((.((((((((((.......)))).)))))).)))).)))).)))...)))).)))))))).

Structure
a      gcuuu  g    -uU   U    C    A      -    uc 
 ucagau     cg ccug   CCC GAGA CUCA GUGUGA gcgu  u
 ||||||     || ||||   ||| |||| |||| |||||| ||||  g
 agucug     gc ggac   ggg cucu gggu cgcacu cgua  a
g      -----  a    cau   c    c    c      u    ca 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrII: 9816746-9816839 [-]

Database links

Mature cbr-lin-4

Accession MIMAT0000464
Description Caenorhabditis briggsae cbr-lin-4 mature miRNA
Sequence 21 - UCCCUGAGACCUCAAGUGUGA - 41
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 11679672
    An extensive class of small RNAs in Caenorhabditis elegans
    "Lee RC, Ambros V"
    "Science (2001) 294:862-864