Stem-loop sequence cbr-lin-4

Accession

MI0000492 (change log)

Description

Caenorhabditis briggsae lin-4 stem-loop

Gene family

MIPF0000303; lin-4

Stem-loop

   a      gcuuu  g    -uu   u    c    a      -    uc 
5'  ucagau     cg ccug   ccc gaga cuca guguga gcgu  u
    ||||||     || ||||   ||| |||| |||| |||||| ||||  g
3'  agucug     gc ggac   ggg cucu gggu cgcacu cgua  a
   g      -----  a    cau   c    c    c      u    ca 

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrII: 9816746-9816839 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079CCD5_6238
• miRBase Tracker:MI0000492

Mature sequence cbr-lin-4

• Accession: MIMAT0000464
• Sequence: 21 - ucccugagaccucaaguguga - 41
• Evidence: by similarity; MI0000002

References

1. PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2. PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).