Accession
MI0000412
Description
Drosophila melanogaster
dme-mir-305 precursor miRNA
Gene family
MIPF0000158;
mir-305
Literature search
12 open access papers mention dme-mir-305
(34 sentences)
(34 sentences)
Sequence
663514
reads,
12557
reads per million, 49 experiments
caugucuAUUGUACUUCAUCAGGUGCUCUGgugugucucguaaccCGGCACAUGUUGAAGUACACUCAauaug
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))
Structure
cuAU U G CU u guc
caugu UGUACUUCA CA GUGCU Gg gu u
||||| ||||||||| || ||||| || ||
guaua ACAUGAAGU GU CACGG Cc ca c
ACUC U A -- - aug
Annotation confidence
High
Do you think this miRNA is real?
Comments
Lai et al. predicted this sequence based on conservation in D. pseudoobscura, but did not verify expression [2]. Aravin et al. describe identification and mapping of the 5' end of the excised sequence by cloning [1].
Genome context
chr2L: 7425972-7426044 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-305
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-305-5p
| Accession | MIMAT0000391 |
| Description | Drosophila melanogaster dme-miR-305-5p mature miRNA |
| Sequence | 8 - AUUGUACUUCAUCAGGUGCUCUG - 30 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-305-3p
| Accession | MIMAT0020827 |
| Description | Drosophila melanogaster dme-miR-305-3p mature miRNA |
| Sequence | 46 - CGGCACAUGUUGAAGUACACUCA - 68 |
| Evidence | not_experimental |
| Database links |
|
References
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