miRBase entry: cel-mir-242

Stem-loop cel-mir-242


Accession
MI0000318
Description
Caenorhabditis elegans cel-mir-242 precursor miRNA
Gene family
MIPF0000366; mir-242


Sequence

2242 reads, 30 reads per million, 16 experiments
uggcucgcgagaguaUUGCGUAGGCCUUUGCUUCGAgagagaagcuucaguucgcagcaauauccuccgcaaaacuuuccccggcuaugcaaaaaa
(((((.(.((((((.(((((.(((...(((((.((((.(((....)))..)))).)))))...))).))))).)))))).).))))).........

Structure
---------     c c      a     U   CCU     U    -a   a 
         uggcu g gagagu UUGCG AGG   UUGCU CGAg  gag a
         ||||| | |||||| ||||| |||   ||||| ||||  |||  
         aucgg c cuuuca aacgc ucc   aacga gcuu  cuu g
aaaaaacgu     c c      a     c   uau     c    ga   c 


Annotation confidence Not enough data
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Genome context
chrIV: 4274247-4274342 [+]

Database links

Mature cel-miR-242

Accession MIMAT0000298
Description Caenorhabditis elegans cel-miR-242 mature miRNA
Sequence 16 - UUGCGUAGGCCUUUGCUUCGA - 36
Evidence experimental
cloned [1-2], Northern [1], Illumina [3], CLIPseq [4]
Database links
Predicted targets

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  3. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  4. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179