miRBase entry: cel-mir-241

Stem-loop cel-mir-241


Accession
MI0000317
Description
Caenorhabditis elegans cel-mir-241 precursor miRNA
Gene family
MIPF0000248; mir-241

Literature search
27 open access papers mention cel-mir-241
(121 sentences)

Sequence

364588 reads, 1755 reads per million, 13 experiments
cgggggugucaaaguUGAGGUAGGUGCGAGAAAUGAcggcauccauauaguaaucguucAUUGUCUCUCAGCUGCUUCAUCugugacauggcuacg
..((.((((((.((.((((((((.((.((((((((((((...(......)...))).))))).)))).)).)))))))).)).))))))..))...

Structure
-cg  -g      a  u        G  C    -     -   cau ca 
   gg  guguca ag UGAGGUAG UG GAGA AAUGA cgg   c  u
   ||  |||||| || |||||||| || |||| ||||| |||   |   
   uc  uacagu uC ACUUCGUC AC CUCU UUAcu gcu   g  a
gca  gg      g  U        G  U    G     u   aau au 


Annotation confidence High
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Genome context
chrV: 14366188-14366283 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-241
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-241-5p

Accession MIMAT0000297
Description Caenorhabditis elegans cel-miR-241-5p mature miRNA
Sequence 16 - UGAGGUAGGUGCGAGAAAUGA - 36
Evidence experimental
cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4]
Database links
Predicted targets

Mature cel-miR-241-3p

Accession MIMAT0020335
Description Caenorhabditis elegans cel-miR-241-3p mature miRNA
Sequence 60 - AUUGUCUCUCAGCUGCUUCAUC - 81
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  3. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  4. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179

  5. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577