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miRBase |
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Stem-loop sequence cel-mir-241 |
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Accession | MI0000317 (change log) | |||||
Description | Caenorhabditis elegans miR-241 stem-loop | |||||
Gene family | MIPF0000248; mir-241 | |||||
Literature search |
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27 open access papers mention cel-mir-241 | |||||
Stem-loop |
--c gg a u g c - - cau ca 5' gg guguca ag ugagguag ug gaga aauga cgg c u || |||||| || |||||||| || |||| ||||| ||| | 3' uc uacagu uc acuucguc ac cucu uuacu gcu g a gca gg g u g u g u aau au |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-241-5p |
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Accession | MIMAT0000297 |
Previous IDs | cel-miR-241 |
Sequence |
16 - ugagguaggugcgagaaauga - 36 |
Deep sequencing | 489119 reads, 15 experiments |
Evidence | experimental; cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4] |
Database links |
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Predicted targets |
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Mature sequence cel-miR-241-3p |
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Accession | MIMAT0020335 |
Previous IDs | cel-miR-241* |
Sequence |
60 - auugucucucagcugcuucauc - 81 |
Deep sequencing | 1279 reads, 12 experiments |
Evidence | experimental; Illumina [5] |
Database links |
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References |
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1 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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2 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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5 |