miRBase entry: cel-mir-124

Stem-loop cel-mir-124


Accession
MI0000302
Description
Caenorhabditis elegans cel-mir-124 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
12 open access papers mention cel-mir-124
(117 sentences)

Sequence

13163 reads, 561 reads per million, 16 experiments
gucccacuugucaucugGCAUGCACCCUAGUGACUUUAGUggacaucuaagucuuccaacUAAGGCACGCGGUGAAUGCCAcguggccaugauggg
..(((((..(((((.((((((.((((...(((.(((((((((((......))))....))))))))))..)))).)))))).)))))...).))))

Structure
gu    - -uu     c      G    CUA   A       ----    au 
  ccca c   gucau ugGCAU CACC   GUG CUUUAGU    ggac  c
  |||| |   ||||| |||||| ||||   ||| |||||||    ||||   
  gggu g   cggug ACCGUA GUGG   CAC GGAAUca    ucug  u
--    a uac     c      A    -CG   -       accu    aa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrIV: 11871738-11871833 [+]

Database links

Mature cel-miR-124-5p

Accession MIMAT0015111
Description Caenorhabditis elegans cel-miR-124-5p mature miRNA
Sequence 18 - GCAUGCACCCUAGUGACUUUAGU - 40
Evidence experimental
CLIPseq [5]
Database links

Mature cel-miR-124-3p

Accession MIMAT0000282
Description Caenorhabditis elegans cel-miR-124-3p mature miRNA
Sequence 61 - UAAGGCACGCGGUGAAUGCCA - 81
Evidence experimental
cloned [1], Northern [1], 454 [3], Illumina [4], CLIPseq [5]
Database links
Predicted targets

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 12747828
    MicroRNAs and other tiny endogenous RNAs in C. elegans
    "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
    "Curr Biol (2003) 13:807-818

  3. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  4. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  5. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179