Stem-loop sequence hsa-mir-147a

Accession

MI0000262 (change log)

Previous IDs

hsa-mir-147

Symbol

HGNC:MIR147A

Description

Homo sapiens miR-147a stem-loop

Gene family

MIPF0000105; mir-147

Literature search

42 open access papers mention hsa-mir-147a
(159 sentences)

Stem-loop

         -a   caa      ug     ---aca   g 
5' aaucua  aga   cauuuc  cacac      cca a
   ||||||  |||   ||||||  |||||      ||| c
3' uuagau  ucu   guaaag  gugug      ggu u
         cg   -uc      gu     accgaa   a 

Deep sequencing

1732 reads, 44.4 reads per million, 108 experiments

Confidence

Annotation confidence: not enough data

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Comments

Lagos-Quintana et al. cloned miR-147 from mouse spleen tissue [1], but the sequence is not present in the mouse genome assembly (NCBI32). The human genome sequence contains a predicted precursor hairpin for miR-147 shown in [1] (supplementary information) and represented here. The expression of miR-147 has not been verified in human.

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr9: 120244979-120245050 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR147
• HGNC:MIR147A
• miRBase Tracker:MI0000262

Mature sequence hsa-miR-147a

• Accession: MIMAT0000251
• Previous IDs: hsa-miR-147
• Sequence: 47 - guguguggaaaugcuucugc - 66
• Deep sequencing: 1732 reads, 108 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-147a
  • TargetScanVert:hsa-miR-147a
  • miRDB:hsa-miR-147a
  • microrna.org:hsa-miR-147a

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).