Browse miRBase by species
Click taxa to expand and collapse the tree. Click species names to list microRNAs.
Jump to: human, mouse, fly, worm, Arabidopsis.
Key: species name (miRNA count) [assembly version]
- Chromalveolata
- Heterokontophyta
- Ectocarpus siliculosus (26 precursors, 52 mature)
- Phaeodactylum tricornutum (13 precursors, 13 mature)
- Metazoa
- Bilateria
- Deuterostoma
- Xenoturbella bocki (8 precursors, 8 mature)
- Chordata
- Cephalochordata
- Branchiostoma floridae (156 precursors, 187 mature) [JGI2.0]
- Urochordata
- Ciona intestinalis (348 precursors, 551 mature) [JGI2]
- Ciona savignyi (27 precursors, 25 mature) [CSAV2.0]
- Oikopleura dioica (66 precursors, 63 mature)
- Vertebrata
- Anolis carolinensis (282 precursors, 416 mature) [AnoCar2.0]
- Agnathostomata
- Petromyzon marinus (244 precursors, 302 mature)
- Amphibia
- Xenopus laevis (22 precursors, 21 mature)
- Xenopus tropicalis (189 precursors, 175 mature) [JGI4.2]
- Aves
- Gallus gallus (684 precursors, 791 mature) [Gallus-gallus-4.0]
- Taeniopygia guttata (243 precursors, 238 mature) [taeGlu3.2.4]
- Mammalia
- Carnivora
- Canis familiaris (323 precursors, 289 mature) [CanFam2]
- Laurasiatheria
- Equus caballus (341 precursors, 360 mature) [EquCab2]
- Metatheria
- Monodelphis domestica (156 precursors, 145 mature) [MonDom5]
- Macropus eugenii (3 precursors, 3 mature)
- Sarcophilus harrisii (67 precursors, 65 mature) [DEVIL7_0]
- Primates
- Atelidae
- Ateles geoffroyi (60 precursors, 54 mature)
- Lagothrix lagotricha (48 precursors, 45 mature)
- Cebidae
- Saguinus labiatus (42 precursors, 40 mature)
- Cercopithecidae
- Macaca mulatta (535 precursors, 544 mature) [MMUL1.0]
- Macaca nemestrina (74 precursors, 70 mature)
- Pygathrix bieti (11 precursors, 9 mature)
- Hominidae
- Gorilla gorilla (322 precursors, 317 mature) [GorGor3]
- Homo sapiens (1600 precursors, 2042 mature) [GRCh37.p5]
- Pan paniscus (88 precursors, 83 mature)
- Pongo pygmaeus (633 precursors, 651 mature) [PPYG2]
- Pan troglodytes (655 precursors, 580 mature) [PanTro2.1.4]
- Symphalangus syndactylus (11 precursors, 10 mature)
- Lemuridae
- Lemur catta (16 precursors, 15 mature)
- Prototheria
- Ornithorhynchus anatinus (337 precursors, 530 mature) [OANA5]
- Rodentia
- Cricetulus griseus (200 precursors, 307 mature)
- Mus musculus (855 precursors, 1281 mature) [GRCm38]
- Rattus norvegicus (446 precursors, 723 mature) [RGSC3.4]
- Ruminantia
- Bos taurus (766 precursors, 755 mature) [UMD3.1]
- Ovis aries (55 precursors, 103 mature)
- Suina
- Sus scrofa (271 precursors, 306 mature) [Sscrofa9]
- Pisces
- Cyprinus carpio (134 precursors, 146 mature)
- Danio rerio (344 precursors, 247 mature) [Zv9]
- Fugu rubripes (129 precursors, 108 mature) [FUGU5]
- Hippoglossus hippoglossus (1 precursors, 1 mature)
- Oryzias latipes (168 precursors, 147 mature) [MEDAKA1]
- Paralichthys olivaceus (20 precursors, 38 mature)
- Tetraodon nigroviridis (132 precursors, 109 mature) [Tetraodon8]
- Echinodermata
- Strongylocentrotus purpuratus (62 precursors, 70 mature) [Spur2.1]
- Hemichordata
- Saccoglossus kowalevskii (91 precursors, 115 mature)
- Ecdysozoa
- Arthropoda
- Chelicerata
- Ixodes scapularis (49 precursors, 49 mature) [Iscaw1]
- Rhipicephalus microplus (24 precursors, 24 mature)
- Tetranychus urticae (52 precursors, 92 mature)
- Crustacea
- Daphnia pulex (44 precursors, 45 mature) [JGI1.0]
- Marsupenaeus japonicus (6 precursors, 8 mature)
- Hexapoda
- Aedes aegypti (101 precursors, 124 mature) [AaegL1]
- Anopheles gambiae (67 precursors, 65 mature) [AgamP3]
- Apis mellifera (218 precursors, 222 mature) [Amel_4.0]
- Acyrthosiphon pisum (117 precursors, 103 mature) [AphidBase2]
- Bombyx mori (489 precursors, 567 mature) [SILKDB2.0]
- Culex quinquefasciatus (74 precursors, 93 mature) [CpipJ1]
- Drosophila ananassae (76 precursors, 75 mature) [dana_r1.3_FB2010_03]
- Drosophila erecta (81 precursors, 78 mature) [dere_r1.3_FB2010_02]
- Drosophila grimshawi (82 precursors, 72 mature) [dgri_r1.3_FB2010_02]
- Drosophila melanogaster (238 precursors, 426 mature) [BDGP5.0]
- Drosophila mojavensis (71 precursors, 71 mature) [dmoj_r1.3_FB2010_02]
- Drosophila persimilis (75 precursors, 69 mature) [dper_r1.3_FB2010_02]
- Drosophila pseudoobscura (210 precursors, 273 mature) [dpse_r2.26_FB2012_01]
- Drosophila sechellia (78 precursors, 76 mature) [dsec_r1.3_FB2010_02]
- Drosophila simulans (136 precursors, 178 mature) [dsim_r1.3_FB2010_02]
- Drosophila virilis (74 precursors, 74 mature) [FB2011_07]
- Drosophila willistoni (77 precursors, 72 mature) [dwil_r1.3_FB2010_02]
- Drosophila yakuba (80 precursors, 75 mature) [dyak_r1.3_FB2010_02]
- Heliconius melpomene (92 precursors, 97 mature) [HelMel1.1]
- Locusta migratoria (7 precursors, 14 mature)
- Manduca sexta (95 precursors, 90 mature)
- Nasonia giraulti (32 precursors, 32 mature)
- Nasonia longicornis (28 precursors, 28 mature)
- Nasonia vitripennis (53 precursors, 53 mature) [Nvit_2.0]
- Tribolium castaneum (220 precursors, 430 mature) [Tcas3.0]
- Mandibulata
- Strigamia maritima (3 precursors, 4 mature)
- Nematoda
- Ascaris suum (97 precursors, 189 mature)
- Brugia malayi (104 precursors, 83 mature)
- Caenorhabditis briggsae (140 precursors, 131 mature) [WS200]
- Caenorhabditis elegans (223 precursors, 368 mature) [WBcel215]
- Caenorhabditis remanei (109 precursors, 137 mature) [WS200]
- Haemonchus contortus (187 precursors, 194 mature)
- Pristionchus pacificus (124 precursors, 99 mature) [WS200]
- Lophotrochozoa
- Annelida
- Capitella teleta (124 precursors, 134 mature) [JGI1.0]
- Brachiopoda
- Glottidia pyramidata (1 precursors, 1 mature)
- Terebratulina retusa (1 precursors, 1 mature)
- Molusca
- Haliotis rufescens (5 precursors, 5 mature)
- Lottia gigantea (60 precursors, 64 mature) [JGI1]
- Nemertea
- Cerebratulus lacteus (2 precursors, 2 mature)
- Platyhelminthes
- Echinococcus granulosus (23 precursors, 26 mature) [WTSI240910]
- Echinococcus multilocularis (22 precursors, 22 mature) [WTSI3]
- Schistosoma japonicum (55 precursors, 78 mature) [ASM15177v1]
- Schistosoma mansoni (20 precursors, 29 mature) [WTSI5]
- Schmidtea mediterranea (148 precursors, 257 mature) [WUSTL3.1]
- Cnidaria
- Hydra magnipapillata (17 precursors, 20 mature)
- Nematostella vectensis (49 precursors, 78 mature) [JGI1.0]
- Porifera
- Amphimedon queenslandica (8 precursors, 16 mature)
- Mycetozoa
- Dictyostelium discoideum (2 precursors, 2 mature) [DictyBase2009]
- Viridiplantae
- Chlorophyta
- Chlamydomonas reinhardtii (50 precursors, 85 mature) [CHLRE3.1]
- Coniferophyta
- Picea abies (40 precursors, 41 mature)
- Pinus densata (31 precursors, 31 mature)
- Pinus taeda (37 precursors, 38 mature)
- Embryophyta
- Physcomitrella patens (229 precursors, 280 mature) [JGI1.1]
- Selaginella moellendorffii (58 precursors, 64 mature)
- Magnoliophyta
- eudicotyledons
- Asteraceae
- Cynara cardunculus (48 precursors, 57 mature)
- Helianthus annuus (8 precursors, 9 mature)
- Helianthus argophyllus (3 precursors, 3 mature)
- Helianthus ciliaris (3 precursors, 3 mature)
- Helianthus exilis (2 precursors, 2 mature)
- Helianthus paradoxus (3 precursors, 3 mature)
- Helianthus petiolaris (3 precursors, 3 mature)
- Helianthus tuberosus (16 precursors, 16 mature)
- Brassicaceae
- Arabidopsis lyrata (201 precursors, 375 mature)
- Arabidopsis thaliana (299 precursors, 338 mature) [TAIR10]
- Brassica napus (90 precursors, 92 mature) [BrassicaDB-20080411]
- Brassica oleracea (6 precursors, 7 mature)
- Brassica rapa (39 precursors, 43 mature)
- Caricaceae
- Carica papaya (1 precursors, 1 mature)
- Cucurbitaceae
- Cucumis melo (120 precursors, 120 mature)
- Euphorbiaceae
- Hevea brasiliensis (28 precursors, 28 mature)
- Manihot esculenta (10 precursors, 10 mature)
- Ricinus communis (63 precursors, 63 mature) [TIGR0.1]
- Fabaceae
- Acacia auriculiformis (7 precursors, 7 mature)
- Arachis hypogaea (23 precursors, 32 mature)
- Acacia mangium (3 precursors, 3 mature)
- Glycine max (506 precursors, 555 mature) [Phytozome5.0]
- Glycine soja (13 precursors, 13 mature)
- Lotus japonicus (3 precursors, 4 mature)
- Medicago truncatula (675 precursors, 719 mature) [Mt3.0]
- Phaseolus vulgaris (8 precursors, 10 mature)
- Vigna unguiculata (18 precursors, 18 mature)
- Lamiales
- Digitalis purpurea (13 precursors, 13 mature)
- Rehmannia glutinosa (13 precursors, 13 mature)
- Salvia sclarea (18 precursors, 18 mature)
- Malvaceae
- Gossypium arboreum (1 precursors, 1 mature)
- Gossypium herbaceum (1 precursors, 1 mature)
- Gossypium hirsutum (37 precursors, 39 mature)
- Gossypium raimondii (4 precursors, 4 mature)
- Theobroma cacao (82 precursors, 82 mature)
- Ranunculaceae
- Aquilegia caerulea (45 precursors, 45 mature)
- Rhizophoraceae
- Bruguiera cylindrica (4 precursors, 4 mature)
- Bruguiera gymnorhiza (4 precursors, 4 mature)
- Rosaceae
- Malus domestica (206 precursors, 207 mature) [maldom1.0]
- Rutaceae
- Citrus clementine (5 precursors, 5 mature)
- Citrus reticulata (4 precursors, 4 mature)
- Citrus sinensis (60 precursors, 64 mature)
- Citrus trifoliata (6 precursors, 6 mature)
- Salicaceae
- Populus euphratica (5 precursors, 5 mature)
- Populus trichocarpa (323 precursors, 369 mature) [JGI_Poptr2.0]
- Solanaceae
- Nicotiana tabacum (163 precursors, 165 mature)
- Solanum lycopersicum (44 precursors, 44 mature) [SL2.40]
- Solanum tuberosum (11 precursors, 11 mature)
- Vitaceae
- Vitis vinifera (163 precursors, 186 mature) [Genoscope-20100122]
- monocotyledons
- Aegilops tauschii (2 precursors, 2 mature)
- Brachypodium distachyon (135 precursors, 136 mature) [v1.0]
- Elaeis guineensis (6 precursors, 6 mature)
- Festuca arundinacea (15 precursors, 15 mature)
- Hordeum vulgare (67 precursors, 69 mature)
- Oryza sativa (591 precursors, 708 mature) [MSU7]
- Sorghum bicolor (206 precursors, 242 mature) [Sorbi1]
- Saccharum officinarum (16 precursors, 16 mature)
- Saccharum ssp. (18 precursors, 19 mature)
- Triticum aestivum (42 precursors, 42 mature) [TIGR_tae2]
- Triticum turgidum (1 precursors, 1 mature)
- Zea mays (172 precursors, 321 mature) [RefGen_v2]
- Viruses
- Bovine herpesvirus 1 (10 precursors, 12 mature)
- BK polyomavirus (1 precursors, 2 mature)
- Bovine leukemia virus (5 precursors, 8 mature)
- Bandicoot papillomatosis carcinomatosis virus type 1 (1 precursors, 1 mature)
- Bandicoot papillomatosis carcinomatosis virus type 2 (1 precursors, 1 mature)
- Epstein Barr virus (25 precursors, 44 mature) [EMBL:AJ507799.2]
- Herpes B virus (3 precursors, 3 mature)
- Human cytomegalovirus (11 precursors, 17 mature) [EMBL:X17403.1]
- Human herpesvirus 6B (4 precursors, 8 mature)
- Human immunodeficiency virus 1 (3 precursors, 4 mature)
- Herpes Simplex Virus 1 (17 precursors, 26 mature)
- Herpes Simplex Virus 2 (18 precursors, 24 mature)
- Herpesvirus saimiri strain A11 (3 precursors, 6 mature)
- Herpesvirus of turkeys (17 precursors, 28 mature)
- Infectious laryngotracheitis virus (7 precursors, 10 mature)
- JC polyomavirus (1 precursors, 2 mature)
- Kaposi sarcoma-associated herpesvirus (13 precursors, 25 mature) [EMBL:U75698.1]
- Mouse cytomegalovirus (18 precursors, 29 mature)
- Merkel cell polyomavirus (1 precursors, 2 mature)
- Mareks disease virus (14 precursors, 26 mature) [EMBL:AF243438.1]
- Mareks disease virus type 2 (18 precursors, 36 mature)
- Mouse gammaherpesvirus 68 (15 precursors, 28 mature) [EMBL:U97553.1]
- Pseudorabies virus (13 precursors, 13 mature)
- Rhesus lymphocryptovirus (36 precursors, 68 mature)
- Rhesus monkey rhadinovirus (7 precursors, 11 mature) [EMBL:AF210726.1]
- Simian virus 40 (1 precursors, 2 mature)