miRNA count: 28645 entries

Release 21: June 2014

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miRBase: the microRNA database

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miRBase is managed by the Griffiths-Jones lab at the Faculty of Life Sciences, University of Manchester with funding from the BBSRC. miRBase was previously hosted and supported by the Wellcome Trust Sanger Institute.

References

If you make use of the data presented here, please cite the following articles in addition to the primary data sources:

miRBase: annotating high confidence microRNAs using deep sequencing data.
Kozomara A, Griffiths-Jones S.
NAR 2014 42:D68-D73

miRBase: integrating microRNA annotation and deep-sequencing data.
Kozomara A, Griffiths-Jones S.
NAR 2011 39:D152-D157

miRBase: tools for microRNA genomics.
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.
NAR 2008 36:D154-D158

miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.
NAR 2006 34:D140-D144

The microRNA Registry.
Griffiths-Jones S.
NAR 2004 32:D109-D111

The following publications provide guidelines on miRNA annotation:

A uniform system for microRNA annotation.
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T.
RNA 2003 9(3):277-279

Criteria for annotation of plant MicroRNAs.
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK.
Plant Cell. 2008 20(12):3186-3190