Browse miRBase by species
Click taxa to expand and collapse the tree. Click species names to list microRNAs.
Jump to: human, mouse, fly, worm, Arabidopsis.
Key: species name (miRNA count) [assembly version]
- Chromalveolata
- Heterokontophyta
- Ectocarpus siliculosus (26 precursors, 52 mature)
- Phaeodactylum tricornutum (13 precursors, 13 mature)
- Metazoa
- Bilateria
- Deuterostoma
- Xenoturbella bocki (8 precursors, 8 mature)
- Chordata
- Cephalochordata
- Branchiostoma floridae (154 precursors, 197 mature) [Brafl2]
- Urochordata
- Ciona intestinalis (350 precursors, 574 mature) [JGI2.0]
- Ciona savignyi (27 precursors, 27 mature) [CSAV2.0]
- Oikopleura dioica (66 precursors, 68 mature)
- Vertebrata
- Anolis carolinensis (282 precursors, 449 mature) [AnoCar2.0]
- Agnathostomata
- Petromyzon marinus (244 precursors, 314 mature)
- Amphibia
- Xenopus laevis (22 precursors, 22 mature)
- Xenopus tropicalis (188 precursors, 212 mature) [JGI4.1]
- Aves
- Gallus gallus (499 precursors, 586 mature) [WASHUC2]
- Taeniopygia guttata (224 precursors, 276 mature) [taeGut3.2.4]
- Mammalia
- Carnivora
- Canis familiaris (323 precursors, 325 mature) [CanFam2.0]
- Laurasiatheria
- Equus caballus (341 precursors, 389 mature) [EquCab2]
- Metatheria
- Monodelphis domestica (156 precursors, 160 mature) [MONDOM5]
- Macropus eugenii (2 precursors, 2 mature)
- Sarcophilus harrisii (67 precursors, 68 mature) [DEVIL7.0]
- Primates
- Atelidae
- Ateles geoffroyi (60 precursors, 61 mature)
- Lagothrix lagotricha (48 precursors, 50 mature)
- Cebidae
- Saguinus labiatus (42 precursors, 43 mature)
- Cercopithecidae
- Macaca mulatta (479 precursors, 540 mature) [MMUL1.0]
- Macaca nemestrina (74 precursors, 77 mature)
- Pygathrix bieti (11 precursors, 11 mature)
- Hominidae
- Gorilla gorilla (85 precursors, 88 mature)
- Homo sapiens (1527 precursors, 2154 mature) [GRCh37]
- Pan paniscus (88 precursors, 92 mature)
- Pongo pygmaeus (581 precursors, 655 mature) [PPYG2]
- Pan troglodytes (600 precursors, 606 mature) [PanTro2.1]
- Symphalangus syndactylus (11 precursors, 11 mature)
- Lemuridae
- Lemur catta (16 precursors, 17 mature)
- Prototheria
- Ornithorhynchus anatinus (337 precursors, 571 mature) [OANA5]
- Rodentia
- Cricetulus griseus (2 precursors, 2 mature)
- Mus musculus (741 precursors, 1324 mature) [NCBIM37]
- Rattus norvegicus (408 precursors, 717 mature) [RGSC3.4]
- Ruminantia
- Bos taurus (662 precursors, 730 mature) [BTAU4.0]
- Ovis aries (55 precursors, 103 mature)
- Suina
- Sus scrofa (228 precursors, 278 mature) [SSCROFA9]
- Pisces
- Danio rerio (344 precursors, 411 mature) [Zv9]
- Fugu rubripes (131 precursors, 134 mature) [FUGU4]
- Oryzias latipes (168 precursors, 206 mature) [MEDAKA1]
- Tetraodon nigroviridis (132 precursors, 133 mature) [Tetraodon8]
- Echinodermata
- Strongylocentrotus purpuratus (57 precursors, 64 mature)
- Hemichordata
- Saccoglossus kowalevskii (91 precursors, 116 mature)
- Ecdysozoa
- Arthropoda
- Chelicerata
- Ixodes scapularis (49 precursors, 49 mature)
- Rhipicephalus microplus (24 precursors, 24 mature)
- Crustacea
- Daphnia pulex (45 precursors, 46 mature) [JGI-Dappu1]
- Hexapoda
- Aedes aegypti (101 precursors, 140 mature) [AaegL1]
- Anopheles gambiae (67 precursors, 68 mature)
- Apis mellifera (174 precursors, 174 mature) [AMEL4.0]
- Acyrthosiphon pisum (123 precursors, 123 mature) [Baylor-Acyr_1.0]
- Bombyx mori (487 precursors, 610 mature) [SILKDB2.0]
- Culex quinquefasciatus (72 precursors, 101 mature)
- Drosophila ananassae (76 precursors, 80 mature) [dana_r1.3_FB201]
- Drosophila erecta (81 precursors, 86 mature) [dere_r1.3_FB201]
- Drosophila grimshawi (82 precursors, 88 mature) [dgri_r1.3_FB201]
- Drosophila melanogaster (240 precursors, 438 mature) [BDGP5.0]
- Drosophila mojavensis (71 precursors, 76 mature) [dmoj_r1.3_FB201]
- Drosophila persimilis (75 precursors, 79 mature) [dper_r1.3_FB201]
- Drosophila pseudoobscura (211 precursors, 303 mature) [dpse_r2.9_FB201]
- Drosophila sechellia (78 precursors, 83 mature) [dsec_r1.3_FB201]
- Drosophila simulans (136 precursors, 185 mature) [dsim_r1.3_FB201]
- Drosophila virilis (74 precursors, 79 mature) [dvir_r1.2_FB201]
- Drosophila willistoni (77 precursors, 83 mature) [dwil_r1.3_FB201]
- Drosophila yakuba (80 precursors, 85 mature) [dyak_r1.3_FB201]
- Heliconius melpomene (2 precursors, 4 mature)
- Locusta migratoria (7 precursors, 14 mature)
- Nasonia giraulti (32 precursors, 32 mature)
- Nasonia longicornis (28 precursors, 28 mature)
- Nasonia vitripennis (53 precursors, 53 mature)
- Tribolium castaneum (206 precursors, 406 mature) [TCAS3.0]
- Mandibulata
- Strigamia maritima (3 precursors, 4 mature)
- Nematoda
- Ascaris suum (97 precursors, 191 mature)
- Brugia malayi (32 precursors, 32 mature)
- Caenorhabditis briggsae (140 precursors, 150 mature) [WS200]
- Caenorhabditis elegans (223 precursors, 375 mature) [WS210]
- Caenorhabditis remanei (109 precursors, 149 mature) [WS200]
- Pristionchus pacificus (124 precursors, 124 mature) [WS200]
- Lophotrochozoa
- Annelida
- Capitella teleta (125 precursors, 134 mature) [Capca1]
- Brachiopoda
- Glottidia pyramidata (1 precursors, 1 mature)
- Terebratulina retusa (1 precursors, 1 mature)
- Molusca
- Haliotis rufescens (5 precursors, 5 mature)
- Lottia gigantea (60 precursors, 64 mature) [JGI1]
- Nemertea
- Cerebratulus lacteus (2 precursors, 2 mature)
- Platyhelminthes
- Echinococcus granulosus (23 precursors, 26 mature) [WTSI-20100924]
- Echinococcus multilocularis (22 precursors, 23 mature) [WTSI-20100813]
- Schistosoma japonicum (55 precursors, 78 mature) [Genbank-WGS-CAB]
- Schistosoma mansoni (5 precursors, 5 mature)
- Schmidtea mediterranea (148 precursors, 271 mature) [WUSTL3.1]
- Cnidaria
- Hydra magnipapillata (17 precursors, 20 mature)
- Nematostella vectensis (49 precursors, 96 mature) [Nemve1]
- Porifera
- Amphimedon queenslandica (8 precursors, 16 mature)
- Mycetozoa
- Dictyostelium discoideum (2 precursors, 2 mature)
- Viridiplantae
- Chlorophyta
- Chlamydomonas reinhardtii (50 precursors, 85 mature) [CHLRE3.1]
- Coniferophyta
- Picea abies (40 precursors, 41 mature)
- Pinus taeda (37 precursors, 38 mature)
- Embryophyta
- Physcomitrella patens (229 precursors, 280 mature) [JGI1.1]
- Selaginella moellendorffii (58 precursors, 64 mature)
- Magnoliophyta
- eudicotyledons
- Brassicaceae
- Arabidopsis lyrata (201 precursors, 375 mature)
- Arabidopsis thaliana (291 precursors, 328 mature) [TAIR9]
- Brassica napus (46 precursors, 48 mature) [BrassicaDB-2008]
- Brassica oleracea (6 precursors, 7 mature)
- Brassica rapa (19 precursors, 23 mature)
- Caricaceae
- Carica papaya (1 precursors, 1 mature)
- Cucurbitaceae
- Cucumis melo (3 precursors, 3 mature)
- Euphorbiaceae
- Ricinus communis (63 precursors, 63 mature) [TIGR0.1]
- Fabaceae
- Acacia auriculiformis (7 precursors, 7 mature)
- Arachis hypogaea (23 precursors, 32 mature)
- Acacia mangium (3 precursors, 3 mature)
- Glycine max (362 precursors, 395 mature) [Glyma1]
- Glycine soja (13 precursors, 13 mature)
- Lotus japonicus (3 precursors, 4 mature)
- Medicago truncatula (635 precursors, 674 mature) [Mt3.0]
- Phaseolus vulgaris (8 precursors, 10 mature)
- Vigna unguiculata (18 precursors, 18 mature)
- Lamiales
- Rehmannia glutinosa (6 precursors, 6 mature)
- Salvia sclarea (18 precursors, 18 mature)
- Malvaceae
- Gossypium arboreum (1 precursors, 1 mature)
- Gossypium herbaceum (1 precursors, 1 mature)
- Gossypium hirsutum (34 precursors, 36 mature)
- Gossypium raimondii (4 precursors, 4 mature)
- Theobroma cacao (82 precursors, 82 mature)
- Ranunculaceae
- Aquilegia caerulea (45 precursors, 45 mature)
- Rhizophoraceae
- Bruguiera cylindrica (4 precursors, 4 mature)
- Bruguiera gymnorhiza (4 precursors, 4 mature)
- Rosaceae
- Malus domestica (1 precursors, 2 mature)
- Rutaceae
- Citrus clementine (5 precursors, 5 mature)
- Citrus reticulata (4 precursors, 4 mature)
- Citrus sinensis (60 precursors, 64 mature)
- Citrus trifoliata (6 precursors, 6 mature)
- Salicaceae
- Populus euphratica (5 precursors, 5 mature)
- Populus trichocarpa (234 precursors, 237 mature) [JGI_Poptr2.0]
- Solanaceae
- Solanum lycopersicum (37 precursors, 37 mature) [SL2.40]
- Vitaceae
- Vitis vinifera (163 precursors, 186 mature) [Genoscope-20100]
- monocotyledons
- Aegilops tauschii (2 precursors, 2 mature)
- Brachypodium distachyon (142 precursors, 146 mature) [JGI1.0]
- Festuca arundinacea (15 precursors, 15 mature)
- Hordeum vulgare (22 precursors, 23 mature)
- Oryza sativa (581 precursors, 661 mature) [MSU6.0]
- Sorghum bicolor (171 precursors, 172 mature) [JGI_sbi1]
- Saccharum officinarum (16 precursors, 16 mature)
- Saccharum ssp. (18 precursors, 20 mature)
- Triticum aestivum (44 precursors, 44 mature) [TIGR_tae2]
- Triticum turgidum (1 precursors, 1 mature)
- Zea mays (172 precursors, 321 mature) [RefGen_v2]
- Viruses
- Bovine herpesvirus 1 (10 precursors, 12 mature)
- BK polyomavirus (1 precursors, 2 mature)
- Bandicoot papillomatosis carcinomatosis virus type 1 (1 precursors, 1 mature)
- Bandicoot papillomatosis carcinomatosis virus type 2 (1 precursors, 1 mature)
- Epstein Barr virus (25 precursors, 44 mature) [EMBL:AJ507799.2]
- Herpes B virus (3 precursors, 3 mature)
- Human cytomegalovirus (11 precursors, 17 mature) [EMBL:X17403.1]
- Human immunodeficiency virus 1 (3 precursors, 4 mature)
- Herpes Simplex Virus 1 (16 precursors, 25 mature)
- Herpes Simplex Virus 2 (18 precursors, 24 mature)
- Herpesvirus saimiri strain A11 (3 precursors, 6 mature)
- Herpesvirus of turkeys (17 precursors, 28 mature)
- Infectious laryngotracheitis virus (7 precursors, 10 mature)
- JC polyomavirus (1 precursors, 2 mature)
- Kaposi sarcoma-associated herpesvirus (13 precursors, 25 mature) [EMBL:U75698.1]
- Mouse cytomegalovirus (18 precursors, 29 mature)
- Merkel cell polyomavirus (1 precursors, 2 mature)
- Mareks disease virus (14 precursors, 26 mature) [EMBL:AF243438.1]
- Mareks disease virus type 2 (18 precursors, 36 mature)
- Mouse gammaherpesvirus 68 (15 precursors, 28 mature) [EMBL:U97553.1]
- Rhesus lymphocryptovirus (36 precursors, 70 mature)
- Rhesus monkey rhadinovirus (7 precursors, 11 mature)
- Simian virus 40 (1 precursors, 2 mature)