Stem-loop eca-mir-339

Accession

MI0049902

Description

Equus caballus eca-mir-339 precursor miRNA

Sequence

ggacagcccccgggaccguggcagccgcuuUCCCUGUCCUCCAGGAGCUCACUuacauccggccgUGAGCUCCCCGAGGCCAGAGCCCgugucugccucauugucagcgccagcacca
((...((...((.(((.(.(((((.(((...(.(((.((((..(((((((((...(....)...)))))))))..)))).))).)...))).))))).)...)))..))...)).)).

Structure

-  aca  ccc  -g   --c u     c   uuU C   U    CA         Uua a 
 gg   gc   cg  gac   g ggcag cgc   C CUG CCUC  GGAGCUCAC   c u
 ||   ||   ||  |||   | ||||| |||   | ||| ||||  |||||||||   |  
 cc   cg   gc  cug   c ccguc gug   G GAC GGAG  CCUCGAGUg   g c
a  --a  acc  ga   uua u     u   CCC A   C    CC         ccg c 

Annotation confidence Not enough data

Genome context

13: 724077-724194 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-339

Mature eca-miR-339-5p

• Accession: MIMAT0077708
• Description: Equus caballus eca-miR-339-5p mature miRNA
• Sequence: 31 - UCCCUGUCCUCCAGGAGCUCACU - 53
• Evidence: not_experimental

Mature eca-miR-339-3p

• Accession: MIMAT0077709
• Description: Equus caballus eca-miR-339-3p mature miRNA
• Sequence: 66 - UGAGCUCCCCGAGGCCAGAGCCC - 88
• Evidence: not_experimental

References