Stem-loop isc-mir-1175

Accession

MI0049120

Description

Ixodes scapularis isc-mir-1175 precursor miRNA

Sequence

caacgacggacgaccgggugauucggaggcAAGUGGAGGAGUGGUCUCCUCucuuugccagacaaaagUGAGAUUCAACUCCUCCAACUUCUcgccgaucaccaaacccaucaccgcagcca
......(((....)))((((((.(((.((.((((((((((((((((((..((.((((.....)))))).))))))..)))))))).)))).)).)))))))))...................

Structure

---caacgacggacgaccg      u   a  c    -        --      CU  c    c 
                   ggugau cgg gg AAGU GGAGGAGU  GGUCUC  Cu uuug c
                   |||||| ||| || |||| ||||||||  ||||||  || |||| a
                   ccacua gcc cU UUCA CCUCCUCA  UUAGAG  ga aaac g
accgacgccacuacccaaa      -   g  C    A        AC      -U  -    a 

Annotation confidence Not enough data

Genome context

ref|NW_024609838.1|: 27829207-27829328 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from isc-mir-1175

Mature isc-miR-1175-5p

• Accession: MIMAT0076267
• Description: Ixodes scapularis isc-miR-1175-5p mature miRNA
• Sequence: 31 - AAGUGGAGGAGUGGUCUCCUC - 51
• Evidence: not_experimental

Mature isc-miR-1175-3p

• Accession: MIMAT0076266
• Description: Ixodes scapularis isc-miR-1175-3p mature miRNA
• Sequence: 69 - UGAGAUUCAACUCCUCCAACUUCU - 92
• Evidence: not_experimental

References