Stem-loop cja-mir-200a

Accession

MI0046524

Description

Callithrix jacchus cja-mir-200a precursor miRNA

Sequence

gcccccagacgcagcucgggcagccguggcCAUCUUACUGGGCAGCAUUGGAuggagucaggucucUAAUACUGCCUGGUAAUGAUGACggcgggguccugccagcagcgaccggcgac
(((......(((.(((..(((((((((.(.(((((((((((((((.((((((..((......)))))))).))))))))))).)))).).))))....)))))))).)))...)))...

Structure

---   cccaga   a   cg     ----    g c    -           C      ug  gu 
   gcc      cgc gcu  ggcag    ccgu g CAUC UUACUGGGCAG AUUGGA  ga  c
   |||      ||| |||  |||||    |||| | |||| ||||||||||| ||||||  ||   
   cgg      gcg cga  ccguc    ggcg C GUAG AAUGGUCCGUC UAAUcu  cu  a
cag   ---cca   a   --     cugg    g A    U           A      --  gg 

Annotation confidence Not enough data

Genome context

ref|NC_071448.1|: 36564446-36564564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-200a

Mature cja-miR-200a-5p

• Accession: MIMAT0071570
• Description: Callithrix jacchus cja-miR-200a-5p mature miRNA
• Sequence: 31 - CAUCUUACUGGGCAGCAUUGGA - 52
• Evidence: not_experimental

Mature cja-miR-200a-3p

• Accession: MIMAT0071569
• Description: Callithrix jacchus cja-miR-200a-3p mature miRNA
• Sequence: 67 - UAAUACUGCCUGGUAAUGAUGAC - 89
• Evidence: not_experimental

References