Stem-loop smc-mir-12461

Accession

MI0041070

Description

Symbiodinium microadriaticum smc-mir-12461 precursor miRNA

Sequence

GAGGAUGCUGAUCAUUCACUGGcccccuguggacacguguguugcacauguguccacagggggccAGUAAAUGAUCAGCAUCCUCCA
((((((((((((((((.((((((((((((((((((((((((...)))))))))))))))))))))))).))))))))))))))))..

Structure

--                C                        u 
  GAGGAUGCUGAUCAUU ACUGGcccccuguggacacgugug  
  |||||||||||||||| |||||||||||||||||||||||| u
  CUCCUACGACUAGUAA UGAccgggggacaccuguguacac  
AC                A                        g 

Annotation confidence Not enough data

Genome context

LSRX01000225.1: 757723-757809 [-]

Mature smc-miR-12461-5p

• Accession: MIMAT0050487
• Description: Symbiodinium microadriaticum smc-miR-12461-5p mature miRNA
• Sequence: 1 - GAGGAUGCUGAUCAUUCACUGG - 22
• Evidence: experimental ; Illumina [1]

Mature smc-miR-12461-3p

• Accession: MIMAT0050488
• Description: Symbiodinium microadriaticum smc-miR-12461-3p mature miRNA
• Sequence: 66 - AGUAAAUGAUCAGCAUCCUCCA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119094
   Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
   "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
   "BMC Genomics (2013) 14:704