Stem-loop smc-mir-12460

Accession

MI0041069

Description

Symbiodinium microadriaticum smc-mir-12460 precursor miRNA

Sequence

UCAGUGGCAGAAGCUGGGAACUcugauuuuaauucguuuuaauuuaaaacgaauuacaaucagagUUCCCAGCUUGUGCCACUGAAA
(((((((((.((((((((((((((((((.((((((((((((...)))))))))))).)))))))))))))))))).)))))))))..

Structure

--         G                  u            a 
  UCAGUGGCA AAGCUGGGAACUcugauu uaauucguuuua  
  ||||||||| |||||||||||||||||| |||||||||||| u
  AGUCACCGU UUCGACCCUUgagacuaa auuaagcaaaau  
AA         G                  c            u 

Annotation confidence Not enough data

Genome context

LSRX01000111.1: 925228-925314 [-]

Mature smc-miR-12460-5p

• Accession: MIMAT0050485
• Description: Symbiodinium microadriaticum smc-miR-12460-5p mature miRNA
• Sequence: 1 - UCAGUGGCAGAAGCUGGGAACU - 22
• Evidence: experimental ; Illumina [1]

Mature smc-miR-12460-3p

• Accession: MIMAT0050486
• Description: Symbiodinium microadriaticum smc-miR-12460-3p mature miRNA
• Sequence: 66 - UUCCCAGCUUGUGCCACUGAAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119094
   Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
   "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
   "BMC Genomics (2013) 14:704