Stem-loop smc-mir-12455-1

Accession

MI0041063

Description

Symbiodinium microadriaticum smc-mir-12455-1 precursor miRNA

Sequence

CUGUGACCGUCCCAUCCUUGCGgaugggcucccguccucugucgucagggugcgggaguccaaccgCAAGGAUGGGAUGCUCAGAGAA
((.(((.((((((((((((((((.(((((((((((.(((((....))))).))))))))))).)))))))))))))))).))).))..

Structure

--  G   C                a           c     u 
  CU UGA CGUCCCAUCCUUGCGg ugggcucccgu cucug c
  || ||| |||||||||||||||| ||||||||||| |||||  
  GA ACU GUAGGGUAGGAACgcc accugagggcg gggac g
AA  G   C                a           u     u 

Annotation confidence Low

Genome context

LSRX01000640.1: 334320-334407 [+]

Mature smc-miR-12455-5p

• Accession: MIMAT0050474
• Description: Symbiodinium microadriaticum smc-miR-12455-5p mature miRNA
• Sequence: 1 - CUGUGACCGUCCCAUCCUUGCG - 22
• Evidence: experimental ; Illumina [1]

Mature smc-miR-12455-3p

• Accession: MIMAT0050475
• Description: Symbiodinium microadriaticum smc-miR-12455-3p mature miRNA
• Sequence: 67 - CAAGGAUGGGAUGCUCAGAGAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119094
   Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
   "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
   "BMC Genomics (2013) 14:704