Stem-loop mdo-mir-1549b

Accession

MI0040937

Description

Monodelphis domestica mdo-mir-1549b precursor miRNA

Sequence

22 reads, 1 reads per million, 3 experiments

ACCGGGCUUGCAGGGCGGAAGcaaaacaaaacucagcUUCUACCUACGAGCCCGGCGA
.(((((((((.(((..((((((.............)))))).))).)))))))))...

Structure

--A         C   GC      aaaac 
   CCGGGCUUG AGG  GGAAGc     a
   ||||||||| |||  ||||||     a
   GGCCCGAGC UCC  UCUUcg     a
AGC         A   -A      acuca 

Annotation confidence Not enough data

Genome context

NW_001586660.1: 16845-16902 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1549b

Mature mdo-miR-1549b-5p

• Accession: MIMAT0050368
• Description: Monodelphis domestica mdo-miR-1549b-5p mature miRNA
• Sequence: 1 - ACCGGGCUUGCAGGGCGGAAG - 21
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-1549b-3p

• Accession: MIMAT0050369
• Description: Monodelphis domestica mdo-miR-1549b-3p mature miRNA
• Sequence: 38 - UUCUACCUACGAGCCCGGCGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973