Stem-loop mdo-mir-12305

Accession

MI0040795

Description

Monodelphis domestica mdo-mir-12305 precursor miRNA

Sequence

108 reads, 4 reads per million, 2 experiments

gCAGGUCUGGUGCCCCGGGUUGCACUugaguuuaaaagaucagUGCACCCCGAGUACCGCUGUUC
((((...((((((..((((.((((((.((..........)))))))).)))).))))))))))..

Structure

--    GUC      CC    U      u  guuu 
  gCAG   UGGUGC  CGGG UGCACU ga    a
  ||||   ||||||  |||| |||||| ||     
  UGUC   GCCAUG  GCCC ACGUga cu    a
CU    ---      -A    C      -  agaa 

Annotation confidence Not enough data

Genome context

chr1: 432129485-432129549 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-12305

Mature mdo-miR-12305-5p

• Accession: MIMAT0050122
• Description: Monodelphis domestica mdo-miR-12305-5p mature miRNA
• Sequence: 2 - CAGGUCUGGUGCCCCGGGUUGCACU - 26
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-12305-3p

• Accession: MIMAT0050123
• Description: Monodelphis domestica mdo-miR-12305-3p mature miRNA
• Sequence: 44 - UGCACCCCGAGUACCGCUGUUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973