Stem-loop aof-MIR828

Accession

MI0040614

Description

Asparagus officinalis aof-MIR828 precursor miRNA

Sequence

11 reads, 14.0 reads per million, 7 experiments

ugggaaggcuUCUUGCUUAGAUGAGUGUUCCUgcucggaaaacacacuagacuuuguuaauguugaacguaaaugaguuagagcacucauuugggcaagaagucuuccaa
..((((((((((((((((((((((((((((..(((((...((((.((........))...)))).........)))))..))))))))))))))))))))))))))))..

Structure

ug                            CU     ------gaa    --c  uag 
  ggaaggcuUCUUGCUUAGAUGAGUGUUC  gcucg         aaca   ac   a
  ||||||||||||||||||||||||||||  |||||         ||||   ||    
  ccuucugaagaacggguuuacucacgag  ugagu         uugu   ug   c
aa                            au     aaaugcaag    aau  uuu 

Annotation confidence Not enough data

Genome context

chr4: 130243479-130243588 [-]

Mature aof-miR828-5p

• Accession: MIMAT0049820
• Description: Asparagus officinalis aof-miR828-5p mature miRNA
• Sequence: 11 - UCUUGCUUAGAUGAGUGUUCCU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279