Stem-loop aof-MIR827

Accession

MI0040613

Description

Asparagus officinalis aof-MIR827 precursor miRNA

Literature search

1 open access papers mention aof-MIR827
(1 sentences)

Sequence

12732 reads, 6983.0 reads per million, 10 experiments

acuuuugaaugugUCAUGUUGAUGGUCAUCUAACAaucaucucaaauauaauaucuuauaaagauuaaaacucauugUUAGAUGACCAUCAACAAACAcuuucagagg
.((((((((.((((..(((((((((((((((((((((...............(((((...)))))........))))))))))))))))))))).)))).))))))))

Structure

a        u    CA                     caucucaaauauaau     a 
 cuuuugaa gugU  UGUUGAUGGUCAUCUAACAau               aucuu  
 |||||||| ||||  |||||||||||||||||||||               ||||| u
 ggagacuu cACA  ACAACUACCAGUAGAUUguua               uagaa  
-        u    -A                     -------cucaaaau     a 

Annotation confidence High

Genome context

KV863416.1: 71795-71902 [-]

Mature aof-miR827-5p

• Accession: MIMAT0060756
• Description: Asparagus officinalis aof-miR827-5p mature miRNA
• Sequence: 14 - UCAUGUUGAUGGUCAUCUAACA - 35
• Evidence: experimental ; unknown

Mature aof-miR827-3p

• Accession: MIMAT0049819
• Description: Asparagus officinalis aof-miR827-3p mature miRNA
• Sequence: 78 - UUAGAUGACCAUCAACAAACA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279