Stem-loop aof-MIR5139b

Accession

MI0040612

Description

Asparagus officinalis aof-MIR5139b precursor miRNA

Sequence

5119 reads, 1662.0 reads per million, 10 experiments

cggcgaugagAUCAACCUGGCUCUGAUACCAgugaucgaaaucaaagaagaagaacagauuuugAGGGGCUCCGGUAAUGGGUAAGgguuugauuuuguuuauguguugcau
..((((((((((((((((.((((...(((((((..((((((((..............))))))))...)))..))))..))))..))).))))))))........)))))..

Structure

cg     --------        -   -G    UGA    --   -ga        aaagaa 
  gcgau        gagAUCAA CCU  GCUC   UACC  Agu   ucgaaauc      g
  |||||        |||||||| |||  ||||   ||||  |||   ||||||||       
  cguug        uuuuaguu ggG  UGGG   AUGG  UCG   Aguuuuag      a
ua     uguauuug        u   AA    -UA    CC   GGG        acaaga 

Annotation confidence Low

Genome context

chr9: 18987299-18987410 [+]

Mature aof-miR5139b-5p

• Accession: MIMAT0049818
• Description: Asparagus officinalis aof-miR5139b-5p mature miRNA
• Sequence: 11 - AUCAACCUGGCUCUGAUACCA - 31
• Evidence: experimental ; Illumina [1]

Mature aof-miR5139b-3p

• Accession: MIMAT0060755
• Description: Asparagus officinalis aof-miR5139b-3p mature miRNA
• Sequence: 65 - AGGGGCUCCGGUAAUGGGUAAG - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279