Stem-loop aof-MIR536

Accession

MI0040610

Description

Asparagus officinalis aof-MIR536 precursor miRNA

Sequence

11409 reads, 3294.0 reads per million, 10 experiments

gaagaagaucgaagaauaagagaugagugcauuugagaCGCACAUGGCGGGGGACGAUCACUguugagguuccggUCGUGCCACGCUGUGUGCGUCucaaccgcucucucugauuguccaucuguuucuauuucuaaagcgaagaagaaga
.....((((.((..(((.(((((.(((((...(((((((((((((((((.((.(((((((((.....)))...)))))).)).))))))))))))))))).)))))))))).))).)).)))).(((((.((((......)))).))))).

Structure

-----------------------gaaga    c  ag   a     u     cau                 G  G      ---   g 
                            agau ga  aau agaga gagug   uugagaCGCACAUGGCG GG ACGAUC   ACU u
                            |||| ||  ||| ||||| |||||   ||||||||||||||||| || ||||||   ||| u
                            ucua cu  uua ucucu cucgc   aacuCUGCGUGUGUCGC CC UGCUgg   ugg g
agaagaagaagcgaaaucuuuaucuuug    c  -g   g     -     --c                 A  G      ccu   a 

Annotation confidence High

Genome context

chr5: 126610015-126610165 [+]

Mature aof-miR536-5p

• Accession: MIMAT0060753
• Description: Asparagus officinalis aof-miR536-5p mature miRNA
• Sequence: 39 - CGCACAUGGCGGGGGACGAUCACU - 62
• Evidence: experimental ; unknown

Mature aof-miR536-3p

• Accession: MIMAT0049816
• Description: Asparagus officinalis aof-miR536-3p mature miRNA
• Sequence: 76 - UCGUGCCACGCUGUGUGCGUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279