Stem-loop aof-MIR535

Accession

MI0040609

Description

Asparagus officinalis aof-MIR535 precursor miRNA

Literature search

1 open access papers mention aof-MIR535
(1 sentences)

Sequence

60249 reads, 18094.0 reads per million, 10 experiments

ugauggacgacgacgacgauggaguUGACAACGAGAGAGAGCACGCuggucggcgcucauggaagauggggguccgcggcugcuuacuugcGUGCUUCCCCUCGUUGUCACCccuucucucuuagugaucucaucgc
.((((((..((...((.((.((((.((((((((((.(.((((((((.(((.(((((.(.((((.........)))).))).))).))).)))))))).).))))))))))...))))))))...))..)).))))..

Structure

-u    -  cg  gac  c  u    --u          A A        u   c   -  u a    aga 
  gaug ga  ac   ga ga ggag   UGACAACGAG G GAGCACGC ggu ggc gc c ugga   u
  |||| ||  ||   || || ||||   |||||||||| | |||||||| ||| ||| || | ||||   g
  cuac cu  ug   cu cu cuuc   ACUGUUGCUC C UUCGUGcg uca ucg cg g gccu   g
cg    u  ag  auu  -  -    cCC          C C        u   u   u  - c    ggg 

Annotation confidence High

Genome context

chr1: 4930252-4930388 [+]

Mature aof-miR535-5p

• Accession: MIMAT0049815
• Description: Asparagus officinalis aof-miR535-5p mature miRNA
• Sequence: 26 - UGACAACGAGAGAGAGCACGC - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR535-3p

• Accession: MIMAT0060752
• Description: Asparagus officinalis aof-miR535-3p mature miRNA
• Sequence: 92 - GUGCUUCCCCUCGUUGUCACC - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279