Stem-loop aof-MIR5139a

Accession

MI0040608

Description

Asparagus officinalis aof-MIR5139a precursor miRNA

Sequence

5994 reads, 2040.0 reads per million, 10 experiments

aauuaauauaGAAACCUGGCUCUGAUACCAauuguuggacccuagagggggggUGAUUAGGGUCAAGAGGCUCUAauaugcaa
........((((..((((((((((((.((((...))))(((((......))))).))))))))).)).)..))))........

Structure

aauuaaua    AA -  -         ----------------A    u 
        uaGA  C CU GGCUCUGAU                 CCAa  
        ||||  | || |||||||||                 |||| u
        AUCU  G GA CUGGGAUUA                 gguu  
aacguaua    CG A  A         GUgggggggagauccca    g 

Annotation confidence Medium

Genome context

chr5: 120387925-120388007 [+]

Mature aof-miR5139a-5p

• Accession: MIMAT0049814
• Description: Asparagus officinalis aof-miR5139a-5p mature miRNA
• Sequence: 11 - GAAACCUGGCUCUGAUACCA - 30
• Evidence: experimental ; Illumina [1]

Mature aof-miR5139a-3p

• Accession: MIMAT0060751
• Description: Asparagus officinalis aof-miR5139a-3p mature miRNA
• Sequence: 54 - UGAUUAGGGUCAAGAGGCUCUA - 75
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279