Stem-loop aof-MIR482b

Accession

MI0040607

Description

Asparagus officinalis aof-MIR482b precursor miRNA

Literature search

1 open access papers mention aof-MIR482b
(3 sentences)

Sequence

48159 reads, 11214.0 reads per million, 10 experiments

gaggacuagauuguuagguguuauuGGAUUGGGUUAGGAUUGGAAAAAucuuaugaauccaaguauuuUUUCCAAAACCUCCCAUUCCGAugauuucuaacuggcuagcccucuc
((((.((((...((((((.(((((((((.((((..(((.(((((((((.(((........)))...)))))))))..))))))).))))))))).))))))...)))).))))..

Structure

--    a    auu      u         U    UU   -A         --u   aug 
  gagg cuag   guuagg guuauuGGA UGGG  AGG  UUGGAAAAA   cuu   a
  |||| ||||   |||||| ||||||||| ||||  |||  |||||||||   |||    
  cucc gauc   caaucu uaguAGCCU ACCC  UCC  AACCUUUuu   gaa   a
cu    c    ggu      u         U    --   AA         uau   ccu 

Annotation confidence High

Genome context

chr4: 19025448-19025562 [-]

Mature aof-miR482b-5p

• Accession: MIMAT0060750
• Description: Asparagus officinalis aof-miR482b-5p mature miRNA
• Sequence: 26 - GGAUUGGGUUAGGAUUGGAAAAA - 48
• Evidence: experimental ; unknown

Mature aof-miR482b-3p

• Accession: MIMAT0049813
• Description: Asparagus officinalis aof-miR482b-3p mature miRNA
• Sequence: 69 - UUUCCAAAACCUCCCAUUCCGA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279