Stem-loop aof-MIR479

Accession

MI0040605

Description

Asparagus officinalis aof-MIR479 precursor miRNA

Sequence

12006 reads, 3336.0 reads per million, 10 experiments

gaagaagaagaagagggcgacauggUGUGAUGUUGGUUCGGCUCAUUuuuuuaauuuuaugaagauagaaaUGAGCCGAACCAAUAUCACUCauguauucuucauucgagcaugcac
.........((((((((..((((((.((((((((((((((((((((((((................))))))))))))))))))))))))))))))..))))).)))..........

Structure

-gaagaagaa   -     cg      U                        uuaauuu 
          gaa gaggg  acaugg GUGAUGUUGGUUCGGCUCAUUuuu       u
          ||| |||||  |||||| ||||||||||||||||||||||||        
          cuu cuucu  uguaCU CACUAUAACCAAGCCGAGUaaaga       a
cacguacgag   a     ua      -                        uagaagu 

Annotation confidence High

Genome context

chr4: 140099175-140099291 [+]

Mature aof-miR479-5p

• Accession: MIMAT0060748
• Description: Asparagus officinalis aof-miR479-5p mature miRNA
• Sequence: 26 - UGUGAUGUUGGUUCGGCUCAUU - 47
• Evidence: experimental ; unknown

Mature aof-miR479-3p

• Accession: MIMAT0049811
• Description: Asparagus officinalis aof-miR479-3p mature miRNA
• Sequence: 72 - UGAGCCGAACCAAUAUCACUC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279