Stem-loop aof-MIR391

Accession

MI0040603

Description

Asparagus officinalis aof-MIR391 precursor miRNA

Sequence

3141 reads, 904.0 reads per million, 9 experiments

auagaagaagcagacucagguuuccUACGCAGGAGAGAUGAUGCCAuugcucauuggagaagcaaaggaaaagggaaaaaaaagcauccuuuguuuagaaaagacggugGCAUCAUCUCUCUGCGAAGGUaacaugaaagcauuugcucuuuug
.(((((((.(((((.(((.(((.(((.(((((.((((((((((((((((.((.((....((((((((((.................))))))))))...)).))))))))))))))))))))))).))).))).))).....))))))))))))

Structure

a       a     ----c   g   u   A     G                c  a  ggag          aaaggga 
 uagaaga gcaga     uca guu ccU CGCAG AGAGAUGAUGCCAuug uc uu    aagcaaagga       a
 ||||||| |||||     ||| ||| ||| ||||| |||||||||||||||| || ||    ||||||||||       a
 guuuucu cguuu     agu caa GGA GCGUC UCUCUACUACGguggc ag aa    uuuguuuccu       a
-       -     acgaa   a   U   A     -                -  a  -aga          acgaaaa 

Annotation confidence High

Genome context

chr2: 3701905-3702058 [-]

Mature aof-miR391-5p

• Accession: MIMAT0049809
• Description: Asparagus officinalis aof-miR391-5p mature miRNA
• Sequence: 26 - UACGCAGGAGAGAUGAUGCCA - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR391-3p

• Accession: MIMAT0060747
• Description: Asparagus officinalis aof-miR391-3p mature miRNA
• Sequence: 110 - GCAUCAUCUCUCUGCGAAGGU - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279